../../tmp/servers/virsirnadb/2062749492
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi1274 | 2 | gtcgtctaatgctagtga | 19 | |
| AY790926.1 | Human coxsackievirus A16 strain shzh00-1, complete genome | 2602 | .................. | 2619 | 94 |
| EU262658.1 | Human coxsackievirus A16 strain shzh05-1, complete genome | 2602 | .................. | 2619 | 94 |
| GQ279371.1 | Human coxsackievirus A16 strain SZ/HK08-7, complete genome | 2602 | .................. | 2619 | 94 |
| HQ269389.1 | Human coxsackievirus A16 isolate XM-CA16-3560, complete genome | 2603 | .................. | 2620 | 94 |
| FJ198212.1 | Human coxsackievirus A16 strain GZ08, complete genome | 2603 | _................. | 2619 | 89 |
| AF177911.1 | Coxsackievirus A16 polyprotein gene, complete cds | 2602 | ......a........... | 2619 | 89 |
| GQ279368.1 | Human coxsackievirus A16 strain SZ/HK08-3, complete genome | 2602 | ......a........... | 2619 | 89 |
| AB575911.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 100 | 2538 | ......a........... | 2555 | 89 |
| AB575912.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 108 | 2552 | ......a........... | 2569 | 89 |
| HQ423141.1 | Human coxsackievirus A16 strain KMM/08, complete genome | 2602 | ......a........... | 2619 | 89 |
| U22521.1 | ETU22521 Human enterovirus 71 polyprotein gene, complete cds | 2601 | _.....g........... | 2617 | 84 |
| U22521.1 | ETU22521 Human enterovirus 71 polyprotein gene, complete cds | 4737 | _...a.c.........a. | 4753 | 73 |
| AB204852.1 | Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-TR | 2601 | _.....g........... | 2617 | 84 |
| AB204852.1 | Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-TR | 4737 | _...a.c.........a. | 4753 | 73 |
| AB204853.1 | Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-ts | 2601 | _.....g........... | 2617 | 84 |
| AB204853.1 | Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-ts | 4737 | _...a.c.........a. | 4753 | 73 |
| DQ341358.1 | Human enterovirus 71 isolate S40221-SAR-00, complete genome | 2602 | _.....a........... | 2618 | 84 |
| EF063152.1 | Human enterovirus 71 strain E2005125-TW polyprotein gene, complete cd | 2602 | _.....a........... | 2618 | 84 |
| FJ172159.1 | Human enterovirus 71 isolate NUH0075/SIN/08, complete genome | 2563 | _.....a........... | 2579 | 84 |
| FJ360544.1 | Human enterovirus 71 isolate GZ-08-01, complete genome | 2599 | _.....a........... | 2615 | 84 |
| GQ994991.1 | Human enterovirus 71 strain Chongqing3-09-China, complete genome | 2600 | _.....a........... | 2616 | 84 |
| GU434678.1 | Human enterovirus 71 strain EV71-Hubei-09-China, complete genome | 2601 | _.....g........... | 2617 | 84 |
| GU434678.1 | Human enterovirus 71 strain EV71-Hubei-09-China, complete genome | 4737 | _...a.c.........a. | 4753 | 73 |
| HQ456313.1 | Human enterovirus A strain GZ2010-95, complete genome | 2600 | _..a.............. | 2616 | 84 |
| FJ607336.1 | Human enterovirus 71 strain 28/SHENZHEN/08/China/HFMD/2008, complete | 2597 | ...a..a........... | 2614 | 84 |
| AF136379.1 | Enterovirus 71 isolate NCKU9822 polyprotein mRNA, complete cds | 2603 | _..a..a........... | 2619 | 78 |
| AF119796.3 | Enterovirus 71 strain TW/2086/98 polyprotein gene, complete cds | 2601 | _..a..a........... | 2617 | 78 |
| AF176044.1 | Enterovirus 71 polyprotein gene, complete cds | 2604 | _..a..a........... | 2620 | 78 |
| AF302996.1 | Enterovirus 71 strain SHZH98 polyprotein gene, complete cds | 2601 | _..a..a........... | 2617 | 78 |
| AF304457.1 | Enterovirus 71 strain Tainan/5746/98 polyprotein mRNA, complete cds | 2603 | _..a..a........... | 2619 | 78 |
| AF304458.1 | Enterovirus 71 strain Tainan/4643/98 polyprotein mRNA, complete cds | 2603 | _..a..a........... | 2619 | 78 |
| AF304459.1 | Enterovirus 71 strain Tainan/6092/98 polyprotein mRNA, complete cds | 2603 | _..a..a........... | 2619 | 78 |
| AY465356.1 | Human enterovirus 71 strain SHZH03, complete genome | 2600 | _..a..a........... | 2616 | 78 |
| DQ060149.1 | Human enterovirus 71 strain pinf7-54A from Taiwan, complete genome | 2603 | _..a..a........... | 2619 | 78 |
| DQ133458.1 | Human enterovirus 71 strain 984 polyprotein gene, complete cds | 2600 | _..a..a........... | 2616 | 78 |
| DQ133459.1 | Human enterovirus 71 strain 1235 polyprotein gene, complete cds | 2600 | _..a..a........... | 2616 | 78 |
| DQ341355.1 | Human enterovirus 71 isolate 06-KOR-00, complete genome | 2602 | _..a..a........... | 2618 | 78 |
| DQ341356.1 | Human enterovirus 71 isolate 03-KOR-00, complete genome | 2602 | _..a..a........... | 2618 | 78 |
| DQ341357.1 | Human enterovirus 71 isolate 7F-AUS-6-99, complete genome | 2602 | _..a..a........... | 2618 | 78 |
| DQ341357.1 | Human enterovirus 71 isolate 7F-AUS-6-99, complete genome | 1284 | ___..g..........a. | 1298 | 68 |
| DQ341360.1 | Human enterovirus 71 isolate J115-MAL-01, complete genome | 2601 | _..a..a........... | 2617 | 78 |
| DQ341361.1 | Human enterovirus 71 isolate 1M-AUS-12-00, complete genome | 2602 | _..a..a........... | 2618 | 78 |
| DQ381846.1 | Human enterovirus 71 strain 6F/AUS/6/99, complete genome | 2602 | _..a..a........... | 2618 | 78 |
| DQ452074.1 | Human enterovirus 71 strain 804/NO/03, complete genome | 2603 | _..a..a........... | 2619 | 78 |
| AM396584.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P | 2601 | _..a..a........... | 2617 | 78 |
| AM396585.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P | 2601 | _..a..a........... | 2617 | 78 |
| EF373576.1 | Human enterovirus 71 strain E2004104-TW-CDC polyprotein gene, complet | 2600 | _..a..a........... | 2616 | 78 |
| EU131776.1 | Human enterovirus 71 strain N3340-TW-02, complete genome | 2600 | _..a..a........... | 2616 | 78 |
| EU414334.1 | Human enterovirus 71 strain PLday4-CH-06, complete genome | 2601 | _..a..a........... | 2617 | 78 |
| EU414335.1 | Human enterovirus 71 strain PLday1-CH-06, complete genome | 2601 | _..a..a........... | 2617 | 78 |
| EU703812.1 | Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/1, complete | 2600 | _..a..a........... | 2616 | 78 |
| EU703813.1 | Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/2, complete | 2600 | _..a..a........... | 2616 | 78 |
| EU703814.1 | Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/3, complete | 2600 | _..a..a........... | 2616 | 78 |
| EU812515.1 | Human enterovirus 71 strain FY23 from China, complete genome | 2603 | _..a..a........... | 2619 | 78 |
| EU864507.1 | Human enterovirus 71 isolate EV71/Zhejiang08, complete genome | 2601 | _..a..a........... | 2617 | 78 |
| FJ158600.1 | Human enterovirus 71 isolate DTID/ZJU-62, complete genome | 2600 | _..a..a........... | 2616 | 78 |
| FJ194964.1 | Human enterovirus 71 strain EV71/GDFS/3/2008, complete genome | 2600 | _..a..a........... | 2616 | 78 |
| FJ194965.1 | Human enterovirus 71 strain EV71/GDSG/17/2008, complete genome | 2600 | _..a..a........... | 2616 | 78 |
| FJ360545.1 | Human enterovirus 71 isolate GZ-08-02, complete genome | 2600 | _..a..a........... | 2616 | 78 |
| FJ360546.1 | Human enterovirus 71 isolate GZ-08-03, complete genome | 2599 | _..a..a........... | 2615 | 78 |
| FJ439769.1 | Human enterovirus 71 strain Fuyang-0805, complete genome | 2600 | _..a..a........... | 2616 | 78 |
| FJ606447.1 | Human enterovirus 71 strain BJ08-Z004-3, complete genome | 2600 | _..a..a........... | 2616 | 78 |
| FJ606448.1 | Human enterovirus 71 strain BJ08-Z011-4, complete genome | 2600 | _..a..a........... | 2616 | 78 |
| FJ606449.1 | Human enterovirus 71 strain BJ08-Z020-1, complete genome | 2600 | _..a..a........... | 2616 | 78 |
| FJ606450.1 | Human enterovirus 71 strain BJ08-Z025-5, complete genome | 2600 | _..a..a........... | 2616 | 78 |
| FJ713137.1 | Human enterovirus 71 strain Shanghai 036-2009, complete genome | 2602 | _..a..a........... | 2618 | 78 |
| FJ828519.1 | Human enterovirus 71 isolate BJ08, complete genome | 2579 | _..a..a........... | 2595 | 78 |
| FJ607334.1 | Human enterovirus 71 strain 1/SHENZHEN/08/China/HFMD/2008, complete g | 2599 | _..a..a........... | 2615 | 78 |
| FJ607335.1 | Human enterovirus 71 strain 4/SHENZHEN/08/China/HFMD/2008, complete g | 2599 | _..a..a........... | 2615 | 78 |
| FJ607337.1 | Human enterovirus 71 strain 121/SHENZHEN/08/China/HFMD Fatal/2008, co | 2599 | _..a..a........... | 2615 | 78 |
| FJ607338.1 | Human enterovirus 71 strain 605/SHENZHEN/08/China/HFMD Severe/2008, c | 2599 | _..a..a........... | 2615 | 78 |
| GQ892830.1 | Human enterovirus 71 strain GX/LZ 08-04/08/CHN, complete genome | 2600 | _..a..a........... | 2616 | 78 |
| GQ994988.1 | Human enterovirus 71 strain Anhui1-09-China, complete genome | 2600 | _..a..a........... | 2616 | 78 |
| GQ994989.1 | Human enterovirus 71 strain Chongqing1-09-China, complete genome | 2601 | _..a..a........... | 2617 | 78 |
| GQ994990.1 | Human enterovirus 71 strain Chongqing2-09-China, complete genome | 2600 | _..a..a........... | 2616 | 78 |
| GQ994992.1 | Human enterovirus 71 strain Henan2-09-China, complete genome | 2592 | _..a..a........... | 2608 | 78 |
| GU196833.1 | Human enterovirus 71 strain Henan1-09-China polyprotein gene, complet | 2412 | _..a..a........... | 2428 | 78 |
| GU366191.1 | Human enterovirus 71 strain Henan10-08-China, complete genome | 2600 | _..a..a........... | 2616 | 78 |
| GU396280.1 | Human enterovirus 71 isolate EV71/Lanzhou01, complete genome | 2600 | _..a..a........... | 2616 | 78 |
| GU459070.1 | Human enterovirus 71 isolate FY23-K12, complete genome | 2603 | _..a..a........... | 2619 | 78 |
| GU459071.1 | Human enterovirus 71 isolate FY23-K14, complete genome | 2600 | _..a..a........... | 2616 | 78 |
| HM003207.1 | Human enterovirus 71 strain 87-2008 Xi'an Shaanxi, complete genome | 2600 | _..a..a........... | 2616 | 78 |
| GQ279369.1 | Human enterovirus 71 strain SZ/HK08-5, complete genome | 2600 | _..a..a........... | 2616 | 78 |
| GQ279370.1 | Human enterovirus 71 strain SZ/HK08-6, complete genome | 2600 | _..a..a........... | 2616 | 78 |
| HM002484.1 | Human enterovirus 71 strain BJ67, complete genome | 2600 | _..a..a........... | 2616 | 78 |
| HM002485.1 | Human enterovirus 71 strain BJ97, complete genome | 2600 | _..a..a........... | 2616 | 78 |
| HM002486.1 | Human enterovirus 71 strain BJ110, complete genome | 2601 | _..a..a........... | 2617 | 78 |
| HM002487.1 | Human enterovirus 71 strain BJ303, complete genome | 2601 | _..a..a........... | 2617 | 78 |
| HM002488.1 | Human enterovirus 71 strain BJ366, complete genome | 2600 | _..a..a........... | 2616 | 78 |
| HM002489.1 | Human enterovirus 71 strain BJ398, complete genome | 2601 | _..a..a........... | 2617 | 78 |
| HM053669.1 | Human enterovirus 71 strain BJ293, complete genome | 2600 | _..a..a........... | 2616 | 78 |
| HM053670.1 | Human enterovirus 71 strain BJ393, complete genome | 2600 | _..a..a........... | 2616 | 78 |
| HM053671.1 | Human enterovirus 71 strain BJ462, complete genome | 2600 | _..a..g........... | 2616 | 78 |
| HQ407557.1 | Human enterovirus 71 strain LN009, complete genome | 2600 | _..a..a........... | 2616 | 78 |
| AB550332.1 | Human enterovirus 71 genomic RNA, complete genome, strain: 1095-org | 2602 | _..a..g........... | 2618 | 78 |
| AB550333.1 | Human enterovirus 71 genomic RNA, complete genome, strain: 1095-LPS1 | 2602 | _..a..g........... | 2618 | 78 |
| AB550338.1 | Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat | 2599 | _..a..a........... | 2615 | 78 |
| AB550339.1 | Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat | 2599 | _..a..a........... | 2615 | 78 |
| AB550340.1 | Human enterovirus 71 genomic RNA, complete genome, strain: KED005-org | 2602 | _..a..a........... | 2618 | 78 |
| AB550341.1 | Human enterovirus 71 genomic RNA, complete genome, strain: KED005-LPS | 2602 | _..a..a........... | 2618 | 78 |
| HQ188292.1 | Human enterovirus 71 strain Fuyang-0805a, complete genome | 2603 | _..a..a........... | 2619 | 78 |
| HQ325852.1 | Human enterovirus 71 strain EV71/HENAN/DC/2010, complete genome | 2601 | _..a..a........... | 2617 | 78 |
| AB575935.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 480 | 2546 | _..a..a........... | 2562 | 78 |
| AB575936.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 961 | 2541 | _..a..a........... | 2557 | 78 |
| AB575936.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 961 | 4677 | _..ca...........a. | 4693 | 73 |
| AB575937.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 141 | 2514 | _..a..a........... | 2530 | 78 |
| AB575938.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 100 | 2575 | _..a..a........... | 2591 | 78 |
| AB575939.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 365 | 2533 | _..a..a........... | 2549 | 78 |
| AB575941.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 248 | 2541 | _..a..a........... | 2557 | 78 |
| AB575942.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 369 | 2536 | _..a..a........... | 2552 | 78 |
| AB575948.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 101 | 2559 | _..a..a........... | 2575 | 78 |
| HQ891923.1 | Human enterovirus 71 strain Shanghai 27-2009, complete genome | 2601 | _..a..a........... | 2617 | 78 |
| HQ891924.1 | Human enterovirus 71 strain Shanghai 28-2009, complete genome | 2601 | _..a..a........... | 2617 | 78 |
| HQ891925.1 | Human enterovirus 71 strain Shanghai 36-2009, complete genome | 2602 | _..a..a........... | 2618 | 78 |
| HQ891926.1 | Human enterovirus 71 strain Shanghai 51-2009, complete genome | 2602 | _..a..a........... | 2618 | 78 |
| HQ891927.1 | Human enterovirus 71 strain Shanghai 64-2009, complete genome | 2601 | _..a..a........... | 2617 | 78 |
| HQ891928.1 | Human enterovirus 71 strain Shanghai 117-2009, complete genome | 2601 | _..a..a........... | 2617 | 78 |
| HQ891929.1 | Human enterovirus 71 strain Shanghai 118-2009, complete genome | 2601 | _..a..a........... | 2617 | 78 |
| HQ400942.1 | Human enterovirus 71 HZ08/Hangzhou/2008, complete genome | 2600 | _..a..a........... | 2616 | 78 |
| HQ423142.1 | Human enterovirus 71 strain KMM/09, complete genome | 2600 | _..a..a........... | 2616 | 78 |
| HQ423143.1 | Human enterovirus 71 strain KM186/09, complete genome | 2600 | _..a..a........... | 2616 | 78 |
| HQ456305.1 | Human enterovirus A strain GZ2010-156, complete genome | 2600 | _..a..a........... | 2616 | 78 |
| HQ456306.1 | Human enterovirus A strain GZ2010-134, complete genome | 2600 | _..a..g........... | 2616 | 78 |
| HQ456307.1 | Human enterovirus A strain GZ2010-120, complete genome | 2600 | _..a..a........... | 2616 | 78 |
| HQ456308.1 | Human enterovirus A strain GZ2010-118, complete genome | 2600 | _..a..a........... | 2616 | 78 |
| HQ456309.1 | Human enterovirus A strain GZ08-831, complete genome | 2600 | _..a..a........... | 2616 | 78 |
| HQ456310.1 | Human enterovirus A strain GZ08-530, complete genome | 2600 | _..a..a........... | 2616 | 78 |
| HQ456311.1 | Human enterovirus A strain GZ08-522, complete genome | 2600 | _..a..a........... | 2616 | 78 |
| HQ456312.1 | Human enterovirus A strain GZ08-520, complete genome | 2600 | _..a..a........... | 2616 | 78 |
| HQ611148.1 | Human enterovirus 71 strain AH08/06, complete genome | 2600 | _..a..a........... | 2616 | 78 |
| JN001860.1 | Human enterovirus 71 strain NB/2010/01, complete genome | 2601 | _..a..a........... | 2617 | 78 |
| HQ426649.1 | Human enterovirus 71 strain 2010FJLY008, complete genome | 2599 | __.a..a........... | 2614 | 73 |
| DQ341359.1 | Human enterovirus 71 isolate S10862-SAR-98, complete genome | 4738 | _..ta...........a. | 4754 | 73 |
| EF373575.1 | Human enterovirus 71 strain E2002042-TW-CDC polyprotein gene, complet | 2606 | _.........a.c..c.. | 2622 | 73 |
| AB192877.1 | Human enterovirus 90 genomic RNA, complete genome | 1289 | ___..g..........a. | 1303 | 68 |
| EU812514.1 | Human coxsackievirus A16 strain FY18 from China, complete genome | 2541 | _____.c........... | 2553 | 63 |